PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129830.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 162aa    MW: 18302.7 Da    PI: 6.0978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.8e-2143136498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++ + k + + lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ ++++++ v+ 
  XP_009129830.1  43 AEVTATNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 136
                     5678899999*********9.7755556779*****************************************************9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1739133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-1440128No hitNo description
Gene3DG3DSA:2.40.330.102.3E-1640132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.40840138IPR003340B3 DNA binding domain
SMARTSM010198.4E-1741138IPR003340B3 DNA binding domain
PfamPF023625.0E-1943136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVFHVTPFGP SCCDIQYTHP HIVKEEADAD DAPTFSYDYC FLAEVTATNQ KDDKMFLPVE  60
AMRCGALNQQ CKEVKLVNKE GKSWTARFGF SESDGAYYIS RGWRKFCRDN RCTNGDLFVF  120
NVVGDGTTTP LLCVCPERKE CTELLIKHFS RIDGSIASTS RN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553461e-166AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAP0116221e-166AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129830.11e-120PREDICTED: B3 domain-containing protein REM2-like
TrEMBLM4DVR91e-119M4DVR9_BRARP; Uncharacterized protein
TrEMBLM4F4R41e-119M4F4R4_BRARP; Uncharacterized protein
STRINGBra020613.1-P1e-120(Brassica rapa)
STRINGBra036068.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-24B3 family protein