PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 399aa MW: 44393.3 Da PI: 4.8507 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 9.1e-32 | 216 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+ XP_009129808.1 216 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 270 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-29 | 214 | 272 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-16 | 214 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-22 | 216 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-9 | 218 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.7E-21 | 304 | 350 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MFRSVPPFMS STLHTSVEDR YPNSFYGSSG QELMNNPVPC QAVSGGNSGG YMFPSPSGFC 60 NVSPLSTHGR ASQTQPPVAT TPSDRLAMQD CFLEAQSMNH PLPEFSDPLD EFFDFSDHVP 120 ALNPQAESSD VMVGSTVEVH EKSEWQSWAD QLMSVDNGSE PNWSELLGDP SPHNLTPPTP 180 SLDVPRQEVV ANQQQHQVVS FEEQLNSSAS GGATTKQRMR WTPELHEAFV EAVNQLGGSE 240 RATPKAVLKL LNNPILTIYH VKSHLQKYRT ARYKPETSEA TGEPQEKKMT SIEDIKSLDM 300 KTSVEITQAL RLQMEVQKRL HEQLETQRAL QLQIEKQGRY LQMMFEKQQK LEENKSSSSS 360 KQCNGASAEV EFESGVVTQA GDQTESAVSV SRKRAREDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-27 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.13010 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129808.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129808.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X2 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | M4DVS8 | 0.0 | M4DVS8_BRARP; Uncharacterized protein | ||||
STRING | Bra020622.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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