PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129717.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 351aa    MW: 38961.2 Da    PI: 5.4652
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_009129717.1  4 MCDFCNEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box26.31.6e-084689442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                     +C++++ ++++  C d ++ lC++C  + H++     H+++++
  XP_009129717.1 46 LICERCNAQPASVRCSDERVSLCQNCDWSNHNNdatsqHKRQSI 89
                    68*****************************9999999998875 PP
3CCT58.91.8e-20294337144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a+lRYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  XP_009129717.1 294 RNNAVLRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 337
                     99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.712147IPR000315B-box-type zinc finger
CDDcd000213.56E-7447No hitNo description
SMARTSM003365.9E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.9684389IPR000315B-box-type zinc finger
PfamPF006431.2E-54689IPR000315B-box-type zinc finger
CDDcd000211.62E-54789No hitNo description
SMARTSM003360.234889IPR000315B-box-type zinc finger
PROSITE profilePS5101714.991294336IPR010402CCT domain
PfamPF062035.1E-15294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGYMCDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWSNHNNDA TSQHKRQSIN CYSGCPSSEE LASIWSFCMD LDFSSAGQSA  120
CEQEMGLMTI DEGTGEDKPG VQNVNLDQPG TSSALAKDIG VSEDDFCGNL MMDEVDLAFE  180
KYDELFGTAY NSSKDLFEHG GIGSLFEKHE GSKAMQQPAG SNAASEDSFM TCRTEPIICF  240
SSQPAHSNIS FSVVMGDSNA GDFQDCGASS MQKLSREIIT SQEETNASSH ATTRNNAVLR  300
YKEKKKARKF DKRVRYVSRK ERADVRRRVK GRFVKSGEAY DYDPMSPARS Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129717.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3P6AT570.0A0A3P6AT57_BRACM; Uncharacterized protein
TrEMBLM4DW150.0M4DW15_BRARP; Uncharacterized protein
STRINGBra020709.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]