PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009129674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29648 Da PI: 9.5213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll ++v+ G g W+++a++ g++R++k+c++rw +yl XP_009129674.1 31 KGPWTPAEDKLLTEYVTSNGEGKWSSVAKCAGLNRSGKSCRLRWVNYL 78 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 84 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ XP_009129674.1 84 RGQITPQEEGIILELHFLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 128 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.579 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-30 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-10 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 18.25 | 83 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 84 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.81E-9 | 88 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MLDLGADQVH QLTHDHDPYQ KQQQQLQGFR KGPWTPAEDK LLTEYVTSNG EGKWSSVAKC 60 AGLNRSGKSC RLRWVNYLRP GLKRGQITPQ EEGIILELHF LWGNKWSTIA RYLPGRTDNE 120 IKNYWRTHYK KKDKSFSKQD KFKRSRKQLG MQPQPHNQRS QMVSRNHMNH DNEQNIASSF 180 SYPTSVIHDQ FHMPQSVTAT SSDHSMTDEG NLWGSLWSLN DEDRPHRFGG GWEQRIAADI 240 SEKFNGDRIE APPCGSG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 31 | 132 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009129674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 1e-130 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 1e-130 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129674.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A078I4T4 | 0.0 | A0A078I4T4_BRANA; BnaAnng07760D protein | ||||
TrEMBL | A0A398AFX5 | 0.0 | A0A398AFX5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DW50 | 0.0 | M4DW50_BRARP; Uncharacterized protein | ||||
STRING | Bra020744.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-118 | myb domain protein 121 |