PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129336.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 295aa    MW: 34457 Da    PI: 9.5053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-1559105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v+++G+ +W+ Ia++m+ +Rt+k+c++rw++ 
   XP_009129336.1  59 RGHWRISEDSQLMELVALYGPQNWNHIAEKMQGRRTGKSCRLRWFNQ 105
                      789999**************************9***********996 PP
2Myb_DNA-binding49.97.4e-16113156247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
   XP_009129336.1 113 REFSVEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 156
                      5799*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.30654106IPR017930Myb domain
SMARTSM007171.1E-1058108IPR001005SANT/Myb domain
PfamPF002492.1E-1459105IPR001005SANT/Myb domain
SuperFamilySSF466897.42E-2659153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2260113IPR009057Homeodomain-like
CDDcd001673.89E-962104No hitNo description
PROSITE profilePS5129424.982107161IPR017930Myb domain
SMARTSM007171.4E-13111159IPR001005SANT/Myb domain
PfamPF002492.9E-12113156IPR001005SANT/Myb domain
CDDcd001672.06E-9114157No hitNo description
Gene3DG3DSA:1.10.10.609.4E-20114161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDVSCFHEYP FDLHCREAFN GFGENNAVEL SNKRSMLKES DEFKKKKKKQ RGSSRFCSRG  60
HWRISEDSQL MELVALYGPQ NWNHIAEKMQ GRRTGKSCRL RWFNQLDPRI NKREFSVEEE  120
ERLLAAHRAF GNKWAMIAKL FNGRTDNALK NHWHVLMARK LRQQSTSYLR RFNESSYNPT  180
SDHKTFTLPP DDGEDMNLVK KSWKTLKEEY TTNLKAQYLQ EEYCSLRMPM QGPHHHCSTF  240
PADSLALTLH VSIQEPSLSS SSCAEHRVVA RYFETTKPPA FIDFLGVGHH QSPKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-28591614105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129336.10.0PREDICTED: myb-related protein MYBAS1
TrEMBLA0A398AF260.0A0A398AF26_BRACM; Uncharacterized protein
STRINGBra033078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-148myb domain protein 110