PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16956.7 Da PI: 10.5173 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 6.7e-21 | 26 | 69 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + +n+ rq tf kR+ngilKKA+ELS+LCd++ ++++fs++gk XP_009129262.1 26 KLDNTKGRQATFGKRKNGILKKAHELSILCDIDLLLLMFSPSGK 69 578999************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.315 | 17 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-26 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-22 | 18 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.27E-14 | 19 | 76 | No hit | No description |
PRINTS | PR00404 | 1.8E-17 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-19 | 28 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-17 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-17 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MVSIRLAFEF ASLGNRIERV KLKIKKLDNT KGRQATFGKR KNGILKKAHE LSILCDIDLL 60 LLMFSPSGKP SMLWYTKIAQ RLLFWVKKPS SSYVLSWWQT FNVVVHETSL FDELTTSNGA 120 MKPQTNSQQQ FCNNSISIYN PNVQNGLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129262.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004138 | 6e-52 | AC004138.3 Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence. | |||
GenBank | CP002685 | 6e-52 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.1 | 2e-15 | AGAMOUS-like 30 |