PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129138.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 300aa    MW: 34173 Da    PI: 8.2331
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.3e-3285139459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +YkeClkNhAas+Ggha+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e 
  XP_009129138.1  85 NKYKECLKNHAASTGGHAIDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEG 139
                     58*************************9.999*********************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2986137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3186137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.06887136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2190140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.3E-19199272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-30205273IPR009057Homeodomain-like
TIGRFAMsTIGR015658.1E-27211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEVASQEEHD MPIPINTTHG GHGHMIHRHH DHRHHNPANS THPNPLMVLS NGNGFGQNHD  60
DPDHHNVGYN IMISNNNNKE KHVVNKYKEC LKNHAASTGG HAIDGCGEFM PSGEEGSIEA  120
LTCSACNCHR NFHRREIEGE DKTYFSPYHH NQPQRNPMFH HHHKMTKSPL PQQMIMPLGV  180
ATTTVSNTES EEDLPFQQPP PPYNHGGHNQ KKRFRTKFTQ EQKEKMLSFA ERIGWKMQRQ  240
EESVVQKFCQ EIGVRRRVLK VWIHNNKHNL SKKSNNNNVE ISAGNNDINK ALAGNLAPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-242112691775ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129138.10.0PREDICTED: zinc-finger homeodomain protein 3
SwissprotO647221e-129ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A398AGW40.0A0A398AGW4_BRACM; Uncharacterized protein
TrEMBLM4ECS90.0M4ECS9_BRARP; Uncharacterized protein
STRINGBra026589.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-109homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]