PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129087.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 422aa    MW: 46676.5 Da    PI: 7.2874
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-32223278156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_009129087.1 223 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 278
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682220280IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28221281IPR009057Homeodomain-like
SuperFamilySSF466892.48E-17221281IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26223278IPR006447Myb domain, plants
PfamPF002493.5E-7225276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASSSELSLD CKPQRYSMLL KSFGDNFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC  60
MQLLGNAVEV YRQQLEAYRE NSNNSNQSVV ARPVLEEFIP LRNTPEKENN KGNNWMTTAQ  120
LWSQPETKPK NIDPTTDQSP KDELASSPKL GHFDVKQRNG GGAFLPFSKE KTLPELALST  180
EVKRVSPANE HTNDHDCNGE SMINGSNNNN NNNSSTTSQS NRKARRCWSP DLHRRFVQAL  240
QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVIG  300
AISAPPEYTT AHGGTPTLYH HQVQNHQGNA AVQPPPHFCS SQEFYTARPP PQQLHHHHFQ  360
TCNGSSADGS ASTDSAHQLT DSAADDGKSP ESGGGERKGL AALREESGNQ SNINGSEITL  420
KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129087.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129087.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLM4ECN80.0M4ECN8_BRARP; Uncharacterized protein
STRINGBra026548.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]