PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129078.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30630.5 Da    PI: 9.2176
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
  XP_009129078.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box86.26.7e-29821748100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++++ ++ +q++  Lk+++e+Lq++qRhllGe++  + ++eL+qLe+q++ slk+iRs+K   +l+q+++l+ ke++l e+n++Lr+klee
  XP_009129078.1  82 NQSAKDLQEKYQDYLMLKSKVESLQHSQRHLLGEEIAGMGVNELEQLEHQVDASLKQIRSRKAGAMLDQLSDLKTKEEMLLETNRDLRRKLEE 174
                     3678899***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
CDDcd002651.97E-43277No hitNo description
SuperFamilySSF554552.88E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-2586172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.6688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS  60
PSGMTKTVEK YRKHSYATMD PNQSAKDLQE KYQDYLMLKS KVESLQHSQR HLLGEEIAGM  120
GVNELEQLEH QVDASLKQIR SRKAGAMLDQ LSDLKTKEEM LLETNRDLRR KLEESDAALT  180
QSMWGAASAG EHSHQQQQQY HQQQQQQQHQ QGMSSYQANP PSQENGFFRP LHGNVALQMS  240
HYNPGVTNAS NSATTSQNVI NGFFPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-209317222101Developmental protein SEPALLATA 3
4ox0_B1e-209317222101Developmental protein SEPALLATA 3
4ox0_C1e-209317222101Developmental protein SEPALLATA 3
4ox0_D1e-209317222101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial vegetative organs and flowers, but not in roots (PubMed:7632923). Expressed in flower primordia (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:7632923}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5080520.0AJ508052.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL3-a (agl3-a gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129078.10.0PREDICTED: agamous-like MADS-box protein AGL3
SwissprotP293831e-153AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A398AKT10.0A0A398AKT1_BRACM; Uncharacterized protein
TrEMBLM4ECN30.0M4ECN3_BRARP; Uncharacterized protein
STRINGBra026543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-156MIKC_MADS family protein
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]