PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128781.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 678aa    MW: 76181.2 Da    PI: 6.2436
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822155.44e-48732081134
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + +    +++++  +s+ ++l+
  XP_009128781.1  73 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQTN----HVVQFPARSIDNPLS 163
                     6899******************************************************************999988....777888888888777 PP

          DUF822  96 .sslkssalas.pvesysaspksssfpspssldsislasa....a 134
                      s+lk++a+a+  ++++++s++ ++ +sp+slds+ +a++    +
  XP_009128781.1 164 sSTLKNCAKAAlECQQQHPSLRIDDNLSPVSLDSVVIAESdhpgN 208
                     67889998776268999*******************998755550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.2E-4674221IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.03E-160244675IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.6E-170244675IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-82251648IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55281295IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55302320IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55324345IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55417439IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55490509IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55524540IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55541552IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55559582IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-55597619IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MHSLNTTTTG SQDPIDPNRN PDPDQYPHRN PSHPQSRRPR GFAATAAAAS MGQADSDVNN  60
GNITGETSSG GGGGKGKRER EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPARADMN  120
DVIAALAREA GWSVDADGTT YRQSHQTNHV VQFPARSIDN PLSSSTLKNC AKAALECQQQ  180
HPSLRIDDNL SPVSLDSVVI AESDHPGNGR YTGASPIPSV GCVDANQLIQ DVHSTERRND  240
YTENFYVPVY AMLPVGVIDN FGQLVDPQGV RQELSYMKSL NVDGVVIDCW WGIVEGWNPQ  300
KYVWSGYREL FNLIRDFKLK LQVVMAFHEY GGNASGNVMI SLPQWVLEIG KDNPDIFFTD  360
REGRRSFECL NWSIDKERVL HGRTGIEVYF DFMRSFRSEF DDLFVEGLIA GIEIGLGASG  420
ELKYPSFPER MGWIYPGIGE FQCYDKYSQT SLLKEAKSRG FAFWGKGPEN AGQYNSQPHE  480
TGFFQERGEY DSYYGRFFLN WYSQLLIGHA ENVLSLANLA FEETKIIVKI PAIYWSYKIA  540
SHAAELTAGY YNPSNRDGYS PVFETLKKYS VTVKFVCPGP QMSSNEHEEA LADPEGLSWQ  600
VVNAAWDKGL LIGGENAITC FDRGGCMRLI EMAKPRNHPD SNHFSFFTYR QPSPLVQGST  660
CFADLDYFIK RMHGDLQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12024667511444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.189360.0bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128781.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A398AGN70.0A0A398AGN7_BRACM; Beta-amylase
STRINGBra021962.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]