PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128690.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 331aa    MW: 36796 Da    PI: 6.0988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28152212259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp++++ tY+g+H+++
  XP_009128690.1 152 EDVFSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDDDPTIFDLTYKGKHTCS 212
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.333146209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-27147212IPR003657WRKY domain
SuperFamilySSF1182901.83E-24150212IPR003657WRKY domain
SMARTSM007741.1E-38151213IPR003657WRKY domain
PfamPF031062.0E-25152211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDMSNWEQKN LLSELVHGLK AAKHLQAELG TASSPPPPWL SSSSLCLTTE MRETLLHQIV  60
SSYEKAILML NGSNVVHSQT AEMVNLAANP VANNGKVPES PTSINGSPRS EEFIDVGGSK  120
DYNLSSKKRK MLPKWTEQVR ISPERGLEGP HEDVFSWRKY GQKDILGAKY PRSYYRCTFR  180
NTQNCWATKQ VQRSDDDPTI FDLTYKGKHT CSQGIPPRDK PDTTPNTTLI NYQNDLLANL  240
RTNLSVRTTN GIESDGFSFP VTPPFYSYES DFGNGGGTFC DMGNYSRPSD FTGLISTNTS  300
TGSSPIFDVD FQFDPTAEIN TGLHTFLHDS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-181532091874Disease resistance protein RRS1
5w3x_D8e-181532091874Disease resistance protein RRS1
6ir8_A6e-18152211968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423961e-104AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336861e-104AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011071e-104BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128690.10.0PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-150WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A078GIQ70.0A0A078GIQ7_BRANA; BnaA02g21850D protein
TrEMBLA0A3P6B1750.0A0A3P6B175_BRACM; Uncharacterized protein
TrEMBLM4EWH40.0M4EWH4_BRARP; Uncharacterized protein
STRINGBra033158.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-153WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]