PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128621.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 415aa    MW: 47547.9 Da    PI: 10.2459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-154293148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g WT+e d+ll ++v ++ g++Wk+Ia++++    k++t+ qc++rw+k+l
   XP_009128621.1 42 KGGWTPEQDKLLMNGVWRYKGKNWKKIAECVPgrkdKRKTDVQCQHRWLKVL 93
                     688**********************************************986 PP
2Myb_DNA-binding42.71.3e-1399148148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd ll ++v+ +  +    W++I++ ++ gR +kqc++rw+++l
   XP_009128621.1  99 KGPWRKEEDNLLSELVNVFIENdkpKWSKISKQLP-GRIGKQCRERWHNHL 148
                      79**************999888888**********.*************97 PP
3Myb_DNA-binding50.16.5e-16154196145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
   XP_009128621.1 154 KTPWTREEELILVQAQRDQGNK-WAEIAKLLP-GRTENNIKNHWN 196
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8093793IPR017930Myb domain
SuperFamilySSF466896.75E-123897IPR009057Homeodomain-like
SMARTSM007173.6E-114195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1844109IPR009057Homeodomain-like
PfamPF139213.4E-1445110No hitNo description
CDDcd001672.41E-94593No hitNo description
SuperFamilySSF466893.46E-1679141IPR009057Homeodomain-like
PROSITE profilePS5129425.57994152IPR017930Myb domain
SMARTSM007172.6E-1598150IPR001005SANT/Myb domain
CDDcd001673.14E-10101148No hitNo description
Gene3DG3DSA:1.10.10.607.7E-24110155IPR009057Homeodomain-like
SuperFamilySSF466897.69E-28128205IPR009057Homeodomain-like
SMARTSM007172.6E-15153201IPR001005SANT/Myb domain
PROSITE profilePS5129419.342153203IPR017930Myb domain
PfamPF002498.0E-14154196IPR001005SANT/Myb domain
CDDcd001677.64E-10156196No hitNo description
Gene3DG3DSA:1.10.10.605.1E-20156201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAESKHLIRS KSDISAQVTP PTCAIDSQEC RRISGPTRRS TKGGWTPEQD KLLMNGVWRY  60
KGKNWKKIAE CVPGRKDKRK TDVQCQHRWL KVLNPNLNKG PWRKEEDNLL SELVNVFIEN  120
DKPKWSKISK QLPGRIGKQC RERWHNHLNP TIKKTPWTRE EELILVQAQR DQGNKWAEIA  180
KLLPGRTENN IKNHWNCSLK RISEHLVTSS PLSGHGPCGS ESSFVNKSNM MEIEKAAKSP  240
QRYSLELTLE PMNWRNTSSS INSLKGDEES TISSSLESDW LRRNSKVEIS ITPSSDDHHH  300
KNVWLTPQLT TPSCVKVPLS PETPQSSSAG QELREIIGRW KRPASTFENT PSIISRTRRK  360
PENDSPFHRC PRTLLSSEEE HSVSNSSSTS PLLMKRNNTC SSLKPLERRL EFDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-53452019157MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-53452019157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128621.10.0PREDICTED: myb protein-like
SwissprotQ9SPN31e-130MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLM4CWC60.0M4CWC6_BRARP; Uncharacterized protein
STRINGBra008523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-125myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]