PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009128570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 248aa MW: 28711.4 Da PI: 5.6653 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 77.5 | 1.5e-24 | 117 | 167 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s yF++pi++AA eL+v+lT+LKr+CR++G RWPhRk+ sl XP_009128570.1 117 SKALSMETISLYFYMPITQAATELDVGLTLLKRRCRELGFTRWPHRKLMSL 167 5899********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.313 | 95 | 188 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-19 | 120 | 167 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MADHTLNEEN PFSVLTHSLS FDDHSLLTYP SFEWEEEHLF MNNSVYEAFP LPTPLPDLEP 60 LSQDVLESYS SASLNVTDQN RGQGDLEQNT EEEAVQETTN KRKINRYVTT YTTFSTSKAL 120 SMETISLYFY MPITQAATEL DVGLTLLKRR CRELGFTRWP HRKLMSLLAL ISNVKLQKFE 180 GGENAEKLKN TLLEMLENQK RRIEENPDLE FDDKTKRLRQ ACFKATHKMK KKASLKSDHL 240 CGFAKEFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009128570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128570.1 | 0.0 | PREDICTED: protein RKD2-like | ||||
Swissprot | Q9CA66 | 2e-93 | RKD2_ARATH; Protein RKD2 | ||||
TrEMBL | A0A398AHJ7 | 0.0 | A0A398AHJ7_BRACM; Uncharacterized protein | ||||
STRING | Bra008153.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-85 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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