PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128517.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 338aa    MW: 38453.6 Da    PI: 8.7169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.51.7e-3035120184
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W+++++y+k+s++yv+tkGW++Fvk+++L+ gD+v F++
  XP_009128517.1  35 FQKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QTGTLLDFQDKNGKMWRFRYSYWKSSQSYVMTKGWSRFVKEKKLNNGDTVSFHR 120
                     99*********************999**7544.46789***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-3930131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-3032120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-2833120No hitNo description
PROSITE profilePS5086313.91635139IPR003340B3 DNA binding domain
SMARTSM010193.9E-2335128IPR003340B3 DNA binding domain
PfamPF023629.9E-2835120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSTRASTHQE PAENGASGSD NNNNNFNSAM REPMFQKVLT PSDVGKLNRL VIPKQHAENY  60
FPLEDNQTGT LLDFQDKNGK MWRFRYSYWK SSQSYVMTKG WSRFVKEKKL NNGDTVSFHR  120
GYVPDDNEPE QRRNILFIDW RNRPDTNLLH NINHHHYPIL GPPPYPTASY YPVTEYSMPH  180
YGRFPSLYHN QFLGYGYGPY GKTVTGGRYY AGSPLDHHHR WNLGRSEPFF YDSCPVFPTT  240
RLTSSLAMLP SSPPSQPPQE GTAKKLRLFG FDVEESSSSG EARAEMGVAG HSSSSPVVIR  300
DNESSWRSPR GEMGGLSSSV VNLSDDEDYK RKGKSLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-46291442114B3 domain-containing transcription factor NGA1
5os9_B3e-46291442114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128517.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128517.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_009128518.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_009128519.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-157NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLM4CWF50.0M4CWF5_BRARP; Uncharacterized protein
STRINGBra008552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-140B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]