PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128185.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 892aa MW: 98556.6 Da PI: 7.1332

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.7	4.4e-40	110	186	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C +dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_009128185.1 110 CQVDNCIEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 186 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-32	103	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.684	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-37	108	189	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.5E-28	110	183	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MEEVGPQVAA PVSLHHPMPR KHHPHWLVSS QPQPKADWNP NLWEWDSQRF EAKPVEAEAN 60 NVNVSHEGEV RGLDLNLSGG FNDAPIITGP NKRVKSGSPG SAGGGNYPKC QVDNCIEDLS 120 IAKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR 180 RRKTQPEEIV APDNTSNNAN MDVMALLTAL ACAQGRNDAK PNGSPAVPQR EQLLQILNKI 240 KALPLPVDLV SKLNNIGVLA RKNLDQPSDM NPQNDMNGVS SPSTMDLLAV LSTTLGSSGP 300 EAIAFLSQGG FGNEDSNEKT KLTYSDHATT TNLEKRTLEF TSFGEGERTS SSHPSPSQDS 360 DLHAQDTRPN LSLRLFTSSP EDESQPTVAS SGKYYSSASS NPVGDRSPSS SPVMQEFFPL 420 QTSPETMRSN NNCRNSCPSP RTSCLPLELF GASNRGAAAN PNFKVSRHHH QSGYASSGSD 480 NSPPSLNSDA QDRTGKIVFK LLGKDPSQLP GTLRTEIYSW LSSIPSEMES YIRPGCVVLS 540 VYVAMSASAW EQLEENLLQR VNSLVQDSEF WSNTRFLVNT GRQLASYKHG RIRLSESWRT 600 LSSPELITVS PLAVVAGEET TLVVRGRSLT NDGISFRCAH MGNYSSMEVT GTAHRSTKFD 660 ELTVNRFKVK GPTLGSLGRC FVEVENGFRS DSFPLIIASA TICKELNRLE DEFHPNELTE 720 HSSDRPRSRE EVVCFLNELG WLFQKKCASE FSLSRFKFLL VCSVERDYSF LVRTLLDMMV 780 ERNLGKDGLM NTESLDMLAE IQLLNRPVKR RNTKMAETLI HYSVNSTAKK FIFLPNITGP 840 GGITPLHLAA STSGSDDMID VLTNDPQEIG LSSWNTLICN EEQPRLQHLG GS

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MEEVGPQVAA PVSLHHPMPR KHHPHWLVSS QPQPKADWNP NLWEWDSQRF EAKPVEAEAN  60
NVNVSHEGEV RGLDLNLSGG FNDAPIITGP NKRVKSGSPG SAGGGNYPKC QVDNCIEDLS  120
IAKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR  180
RRKTQPEEIV APDNTSNNAN MDVMALLTAL ACAQGRNDAK PNGSPAVPQR EQLLQILNKI  240
KALPLPVDLV SKLNNIGVLA RKNLDQPSDM NPQNDMNGVS SPSTMDLLAV LSTTLGSSGP  300
EAIAFLSQGG FGNEDSNEKT KLTYSDHATT TNLEKRTLEF TSFGEGERTS SSHPSPSQDS  360
DLHAQDTRPN LSLRLFTSSP EDESQPTVAS SGKYYSSASS NPVGDRSPSS SPVMQEFFPL  420
QTSPETMRSN NNCRNSCPSP RTSCLPLELF GASNRGAAAN PNFKVSRHHH QSGYASSGSD  480
NSPPSLNSDA QDRTGKIVFK LLGKDPSQLP GTLRTEIYSW LSSIPSEMES YIRPGCVVLS  540
VYVAMSASAW EQLEENLLQR VNSLVQDSEF WSNTRFLVNT GRQLASYKHG RIRLSESWRT  600
LSSPELITVS PLAVVAGEET TLVVRGRSLT NDGISFRCAH MGNYSSMEVT GTAHRSTKFD  660
ELTVNRFKVK GPTLGSLGRC FVEVENGFRS DSFPLIIASA TICKELNRLE DEFHPNELTE  720
HSSDRPRSRE EVVCFLNELG WLFQKKCASE FSLSRFKFLL VCSVERDYSF LVRTLLDMMV  780
ERNLGKDGLM NTESLDMLAE IQLLNRPVKR RNTKMAETLI HYSVNSTAKK FIFLPNITGP  840
GGITPLHLAA STSGSDDMID VLTNDPQEIG LSSWNTLICN EEQPRLQHLG GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	100	183	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	805	810	RPVKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.21563	1e-53	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128185.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128185.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16 isoform X2
Swissprot	Q700C2	0.0	SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBL	A0A398ABP0	0.0	A0A398ABP0_BRACM; Uncharacterized protein
STRING	Bo2g091010.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein