PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009128127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 446aa MW: 48504.8 Da PI: 9.6368 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 199 | 220 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_009128127.1 199 CSQCGEVFPKLESLELHQAVrH 220 ******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.037 | 197 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.78E-22 | 222 | 442 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 3.3E-15 | 224 | 443 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MALLTFLPEN AVSPNHTPPP NKRKNREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN 60 LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKLGSSCS SICRFRDVAH GNTRVVDRAD 120 HSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT SSATTSFRAM QFRKLSGCYE 180 CHMIVDPSKY PISPRVRACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK 240 SSWLKKDSPI CKIERILKVQ NTQSTIQRFE DCRDAVKARA LQTTRKDARC AADGNELLRF 300 HCTTLTCSLG SRGSSSLCSN LPNCGVCNVI RHGFQGKSGT GGANAGVRTT SSSGRADDLL 360 RCSDDARRVM LVCRVIAGSV KRVDSTAAEK KSPVEDNSTV GVSSTGGVFD SVAVNAGAYS 420 NLEELVVYNP RAILPCFVVI YKVVES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009128127.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352975 | 0.0 | AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128127.1 | 0.0 | PREDICTED: uncharacterized protein LOC103852976 | ||||
TrEMBL | M4CVH1 | 0.0 | M4CVH1_BRARP; Uncharacterized protein | ||||
STRING | Bra008218.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 0.0 | C2H2-like zinc finger protein |