PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128045.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 246aa    MW: 28334.4 Da    PI: 9.8288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd  l+ +++++G ++W + +++ g++R++k+c++rw++yl
   XP_009128045.1 14 RGEWTAEEDRMLIAYINKYGVRDWGALPKRAGLHRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding54.82.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g++T++E++ +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
   XP_009128045.1  67 KGKFTPQEEDDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                      79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.349961IPR017930Myb domain
SuperFamilySSF466893.88E-3011108IPR009057Homeodomain-like
SMARTSM007177.5E-161363IPR001005SANT/Myb domain
PfamPF002498.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231568IPR009057Homeodomain-like
CDDcd001675.34E-111661No hitNo description
PROSITE profilePS5129425.6162116IPR017930Myb domain
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.69E-969109No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRTTWFDVD GIKRGEWTAE EDRMLIAYIN KYGVRDWGAL PKRAGLHRCG KSCRLRWLNY  60
LRPGIKKGKF TPQEEDDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLRRSG  120
IDPMTHEPIK ATSSSTRLSP ARRHSSSTTS FSLSSTGSVR LLNKLAAGIS SRKLALDRIR  180
TVMISSEPRE VDEEEKTMIS SRKEEEKVIG CFMEIDKNLI STMSLDELAC DSSYYYYDDW  240
LRGCFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128045.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128044.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9M0J57e-57MYB41_ARATH; Transcription factor MYB41
TrEMBLM4CVA20.0M4CVA2_BRARP; Uncharacterized protein
STRINGBra008149.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-108myb domain protein 95
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]