PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 36657.9 Da PI: 5.464 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.7 | 1.3e-15 | 126 | 177 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ XP_009127909.1 126 QRMTHIAVERNRRKQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 177 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.40E-13 | 124 | 181 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-14 | 125 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.38 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-16 | 125 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-13 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-11 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.551 | 252 | 326 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MALEAVVYPQ DPFSLISCKD IQFHDFYFQQ EDNQDPLDTK NNIKLGQEQR QGLPRINYNG 60 KSVDTFTNDD YNYNDQEEDL RWPRDDHLYG SALDQPPPSD VAAGGGRRKR RRRTKSSKNK 120 EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVGGAI NYLKELEHHL 180 QSIEPPLKST TVPVDTESAS PAADQINTIA ASSLGQFSEF FAFPQYSSRP SSSSVAEGVA 240 EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE 300 GSQLNTVEDI AAGMNQILRR IEEESS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 112 | RRKRRRR |
2 | 107 | 111 | RKRRR |
3 | 107 | 113 | RKRRRRT |
4 | 126 | 137 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127909.1 | 0.0 | PREDICTED: transcription factor bHLH96-like isoform X2 | ||||
Swissprot | Q9C7T4 | 1e-168 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | M4CUX2 | 0.0 | M4CUX2_BRARP; Uncharacterized protein | ||||
STRING | Bra008017.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-161 | bHLH family protein |
Publications ? help Back to Top | |||
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