PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21718.6 Da PI: 8.484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 38 | 81 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl XP_009127842.1 38 NFSKDEDDLILRLHALLGNR-WSLIAGRLP-GRTDTEIRIHWETYL 81 79******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.57E-15 | 20 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 28 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.575 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 38 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-11 | 38 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MNIVCVRALY PPSRLLHRAE RCRVGGRNYE KPELKQSNFS KDEDDLILRL HALLGNRWSL 60 IAGRLPGRTD TEIRIHWETY LKRKLMKMGI DPTNHRLYHH ANYISRQYLN SSHKKLETDI 120 ISDQSSSVSE SCDMRMLPVS ISTNCYDDSA SSSAGHSHLP DLNISLIPAE TVVSWPVCGL 180 QESNSNGSTR Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 19 | 85 | 42 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127842.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN379101 | 0.0 | JN379101.1 Brassica napus myb-like transcription factor 2 (MYBL2-4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127842.2 | 1e-140 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | I6T5P3 | 1e-139 | I6T5P3_BRARO; Myb-like transcription factor 2 | ||||
TrEMBL | M4CUR2 | 1e-139 | M4CUR2_BRARP; Uncharacterized protein | ||||
STRING | Bra007957.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 9e-77 | MYB-like 2 |