PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127763.1
Common NameWRKY36
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 383aa    MW: 42989.9 Da    PI: 7.688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.88.2e-27208267259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  XP_009127763.1 208 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 267
                     8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-28192269IPR003657WRKY domain
PROSITE profilePS5081124.478202269IPR003657WRKY domain
SuperFamilySSF1182903.92E-24203269IPR003657WRKY domain
SMARTSM007747.0E-33207268IPR003657WRKY domain
PfamPF031065.8E-25208267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIKEEIDSCV HPLDGGMAES DKEVELDATK AKVDKVREEN EKLKLLLSTV RTEYNSLQMH  60
VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSIKNKEG  120
SEKKRWAHGL AFRIQSFEDP DTNQTMRLDN LSKEVKNKSV ENKYLSSRKD VKTARNEDQH  180
ELLEGHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP  240
VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF  300
PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG  360
LRSQAPMNTY SHLSHHTRLF GRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-182072691474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300520.0KF430052.1 Brassica rapa WRKY transcription factor 36 (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288882.10.0probable WRKY transcription factor 36
RefseqXP_013717326.10.0probable WRKY transcription factor 36 isoform X1
SwissprotQ9CAR41e-164WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLM4CUI90.0M4CUI9_BRARP; Uncharacterized protein
TrEMBLV5RH130.0V5RH13_BRACM; WRKY transcription factor 36
STRINGBra007884.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-137WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]
  2. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]