PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 297aa MW: 34284.3 Da PI: 6.2718 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.8e-31 | 168 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_009127606.1 168 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 227 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-33 | 153 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-28 | 161 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.828 | 163 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 168 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-28 | 169 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGMDLSLKLE KEKDEERSTH ICERKELEEK EDASEDKDEK MVKEDEIEDS CLSSRTRQEE 60 KEREELLQMQ IEMEHVKEEN TRLRKLVEQT LQDYRQLEMK FPVIDQTNNM KKQKQDENKE 120 LESNNTQRYN SSNKAQGQDM NTQRVIMSSP GNRKTRVSVR ARCDTPTMND GCQWRKYGQK 180 TAKGNPCPRA YYRCTVAPGC PVRKQVQRCL EDMSILITTY EGTHNHPLPV GATAMASTAS 240 ASPFLLLDSS DNLSHPSYLQ QNGSNKQSVR SLINFDDSSF RGGDHVSSSQ NRLNWMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-23 | 155 | 231 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127606.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127606.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 isoform X2 | ||||
Swissprot | Q9C9F0 | 1e-131 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A398AA16 | 0.0 | A0A398AA16_BRACM; Uncharacterized protein | ||||
STRING | Bra033956.1-P | 1e-175 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-112 | WRKY DNA-binding protein 9 |