PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127604.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 334aa    MW: 38436 Da    PI: 6.0309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31205264159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009127604.1 205 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 264
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-33190266IPR003657WRKY domain
SuperFamilySSF1182905.75E-28198266IPR003657WRKY domain
PROSITE profilePS5081128.828200266IPR003657WRKY domain
SMARTSM007741.9E-37205265IPR003657WRKY domain
PfamPF031061.2E-27206264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGMDLSLKLE KEKDEERSTH ICERKELEEK EDASEDKDEK MVKEDEIEDS CLSSRTRQEE  60
KEREELLQMQ IEMEHVKEEN TRLRKLVEQT LQDYRQLEMK FPVIDQTNNM YLETFLGAQA  120
KDRKRGVERY DSLNLVEGEL GLSLSLQKKQ KQDENKELES NNTQRYNSSN KAQGQDMNTQ  180
RVIMSSPGNR KTRVSVRARC DTPTMNDGCQ WRKYGQKTAK GNPCPRAYYR CTVAPGCPVR  240
KQVQRCLEDM SILITTYEGT HNHPLPVGAT AMASTASASP FLLLDSSDNL SHPSYLQQNG  300
SNKQSVRSLI NFDDSSFRGG DHVSSSQNRL NWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23192268176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127604.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127604.10.0PREDICTED: probable WRKY transcription factor 9 isoform X1
SwissprotQ9C9F01e-149WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A398AA160.0A0A398AA16_BRACM; Uncharacterized protein
STRINGBra033956.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-117WRKY DNA-binding protein 9