PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127539.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 338aa MW: 38511.8 Da PI: 5.477

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118	1.2e-36	84	217	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg..... 88 a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++ + ++++ ++ ++++++ + XP_009127539.1 84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEKKLNNKDGdygNNRGGVEEDEE---Dgdksf 175 89**************************************************************5555533322222222222222...133456 PP TCP 89 ......kaaksaa.kskksqksaasalnlakesrakararar 123 +++++ + kk++ks+ s l+++ r k+++ r XP_009127539.1 176 vygwspDSCEEVVyEVKKTEKSNVSSKGLMDKARGKSKQITR 217 677777666666656666666666666666655555554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.7E-35	85	192	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.039	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASPGQMVSA VPESLIDYMS 60 FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM 120 LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDGDYGNN RGGVEEDEED GDKSFVYGWS 180 PDSCEEVVYE VKKTEKSNVS SKGLMDKARG KSKQITREMV YDHPEAVSEI TQTEIMDPFK 240 RSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDQSYNQHYG TFMLKDKGSS 300 SNYNTILPQN LDYGYDQNPF MDQLFCAVTN RNFPRGFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-14	91	144	1	54	Putative transcription factor PCF6
5zkt_B	5e-14	91	144	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127539.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189200	0.0	AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127539.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-155	TCP1_ARATH; Transcription factor TCP1
TrEMBL	M4EYW8	0.0	M4EYW8_BRARP; Uncharacterized protein
STRING	Bra034010.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-148	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]