PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127467.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 262aa MW: 28559.9 Da PI: 6.868

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_009127467.1 87 FSCNYCQRKFYSSQALGGHQNAH 109 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.06E-6	83	114	No hit	No description
PROSITE profile	PS50157	11.427	87	114	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMRPILDLEI EASSKHDHSD STSSQVASNL SPVGDDYKPI SLDLSLCFNN NNNNLDLESS 60 SLTLPISSTS EISNPEQQQP SVSKRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKRAM 120 RMGLAGVFPG RGSSSSYAAA ATAAALSCLP LHGSGNNGNM TSFRTLGIRA HASPHDLGIT 180 RPTQETIIRN IARFNQGYFS NFVPFLVEDD EAELLWPGSF RQQASDAAEG GNGDLGQRKM 240 DYLEVKQAVD MKCSLPDLTL KL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31770	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127467.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127466.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_009127467.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_013676694.1	0.0	zinc finger protein 4-like
Refseq	XP_013676695.1	0.0	zinc finger protein 4-like
Swissprot	Q39263	1e-118	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A398AGY6	0.0	A0A398AGY6_BRACM; Uncharacterized protein
TrEMBL	M4FF78	0.0	M4FF78_BRARP; Uncharacterized protein
STRING	Bra039750.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-111	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]