PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127268.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 281aa    MW: 30182.5 Da    PI: 5.419
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.86.5e-37481462103
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++    +   +  ++s +  + ++ 
  XP_009127268.1  48 APKRPPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP--QFESD 138
                     799*************************************************************9999955421..222222222222..12222 PP

             TCP  96 kskksqks 103
                      ++ ++++
  XP_009127268.1 139 GGSGKRRR 146
                     22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.77654108IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2954130IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESNLEGKEA MAHLSDPDPE TNRGMLLKQE DDDPNKQQEV GFLQPVTAPK RPPSKDRHTK  60
VEGRGRRIRM PAGCAARIFQ LTRELGHKSD GETIRWLLER SEPAIIEATG TGTIPAIAVS  120
VNGALKIPTD STPQFESDGG SGKRRRRNCT SEFVDINRQD SSVTSGLAPI TASSYGVNLM  180
NVNAQSFVPF WQTGFVTGGP NQMGHMWAIP TVAAPSFLNG GGTRPVPSYV SNTSDAEPQM  240
GTSGGGGDEG TTQTLRDFSL ETYDKKELQF LGGSGDNTSP S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127268.10.0PREDICTED: transcription factor TCP19
RefseqXP_009127270.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT891e-127TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A291I3380.0A0A291I338_BRARR; TCP19
TrEMBLA0A398AC330.0A0A398AC33_BRACM; Uncharacterized protein
TrEMBLM4E1C00.0M4E1C0_BRARP; Uncharacterized protein
STRINGBra022568.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-122TCP family protein