PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 579aa    MW: 62282.3 Da    PI: 5.91
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.71.1e-1072005792374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A av++g++e a +lLa +s + +++ ++ +Rl+ +++ AL+ r++   +e  +  +p +++e   +e+l +++l++e+sP++k++++
  XP_009127236.1 200 RQTVMEIAAAVAEGKTEIAAELLACVSPTPNQKTNSEERLVNFMVTALRLRINPAEKESRAPPSPATATELYGKEHLISTQLLYELSPCFKLGFM 294
                     6889*************************************************9555555444555555555*********************** PP

            GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +aN aIl+a+  +       +H++Df+i+ G+Q+++Ll+aL++R+   ++p  ++iT+v +  +g +++l+++g+rL+++ ++lgv+++f+v+++
  XP_009127236.1 295 AANLAILDAAGDNhdgggVLMHVVDFEIGDGGQYVNLLHALSTRRsgdDKPLVVKITAVTN--HGGERRLKAVGDRLSQLGDRLGVSLRFKVVAS 387
                     **********99977754567*********************99966334559********..77***************************888 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      rl d++ e+L + p+E laVnl+++l+r++desv++e++rd++L+ vk+l+P+vv++veqe++ n+++Fl r++ea+ +y al+ds+e+++++ 
  XP_009127236.1 388 LRLGDISRESLGCGPDEPLAVNLAFKLYRVPDESVCMENPRDALLRRVKGLEPRVVTLVEQEMNSNTAPFLGRVSEACACYGALLDSVESSVASS 482
                     8********************************************************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvS 371
                     + +r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +p+sek+a+++k+ l + +    g++v+e++g +++gW++r+L ++S
  XP_009127236.1 483 NLDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPVSEKIAESMKSRLGNGNivHSGFTVKEDDGGVCFGWMGRTLAVAS 576
                     **********.****************************************************998887899*********************** PP

            GRAS 372 aWr 374
                     aWr
  XP_009127236.1 577 AWR 579
                     **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.902173557IPR005202Transcription factor GRAS
PfamPF035143.9E-105200579IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MVSGFPSGGG DGRSTPGGFG TVVNNNPQPT YRSQSPGIFL DQTGNRFSGG KRTLADFQAA  60
QQQQAAVNAF LLRSVKPRTF QNLQSPTIGL TSVNDMGLFG GSSQTQHQTD LVGIRMGYGS  120
SIEPVQNLNR VEDSKNMLSS SLRELEKQLL EDDDESDAQG GGDDVSTITH SNSDWLHRVL  180
TPVLSSSPSS ASSPSTTCSR QTVMEIAAAV AEGKTEIAAE LLACVSPTPN QKTNSEERLV  240
NFMVTALRLR INPAEKESRA PPSPATATEL YGKEHLISTQ LLYELSPCFK LGFMAANLAI  300
LDAAGDNHDG GGVLMHVVDF EIGDGGQYVN LLHALSTRRS GDDKPLVVKI TAVTNHGGER  360
RLKAVGDRLS QLGDRLGVSL RFKVVASLRL GDISRESLGC GPDEPLAVNL AFKLYRVPDE  420
SVCMENPRDA LLRRVKGLEP RVVTLVEQEM NSNTAPFLGR VSEACACYGA LLDSVESSVA  480
SSNLDRAKVE EGIGRKLINA VACEGIDRIE RCEVFGKWRM RMSMAGFELM PVSEKIAESM  540
KSRLGNGNIV HSGFTVKEDD GGVCFGWMGR TLAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3419757910375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127236.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM4E1E80.0M4E1E8_BRARP; Uncharacterized protein
STRINGBra022596.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8