PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 229aa    MW: 26249.8 Da    PI: 10.1053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-154592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l  ++  +G g+W+ I+r+ g++R +k+c++rw +yl
   XP_009127225.1 45 RGLWKPEEDMILRSYIDTHGEGNWADISRRSGLKRGGKSCRLRWKNYL 92
                     788*****************************99************97 PP

2Myb_DNA-binding51.42.6e-1698143148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_009127225.1  98 RGGMTPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 143
                      6789******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4094092IPR017930Myb domain
SuperFamilySSF466891.39E-2843139IPR009057Homeodomain-like
SMARTSM007174.4E-134494IPR001005SANT/Myb domain
PfamPF002492.6E-134592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-224699IPR009057Homeodomain-like
CDDcd001672.26E-94892No hitNo description
PROSITE profilePS5129425.02793147IPR017930Myb domain
SMARTSM007171.1E-1597145IPR001005SANT/Myb domain
PfamPF002491.0E-1498143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23100146IPR009057Homeodomain-like
CDDcd001673.15E-11101143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLELKLETRA RYAHFIANTA SLSNCGGQRR RMEKREEGRK THVKRGLWKP EEDMILRSYI  60
DTHGEGNWAD ISRRSGLKRG GKSCRLRWKN YLRPNIKRGG MTPQEQDLII RMHKLLGNRW  120
SLIAGRLPGR TDNEVKNYWN THLNKKSSSR KQNAAESVEA TPLVDKPVMS TEVRGSHGGG  180
EGEEGTTTTW MEETNFFARI ESPQPLTAHY PDTLCFDPSF AFTDCFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-234314625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127225.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127225.11e-172PREDICTED: transcription factor MYB82
SwissprotQ9LTF71e-109MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A3P6AD111e-146A0A3P6AD11_BRACM; Uncharacterized protein
TrEMBLM4E1F41e-146M4E1F4_BRARP; Uncharacterized protein
STRINGBra022602.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-96myb domain protein 82