PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26249.8 Da PI: 10.1053 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.7e-15 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd +l ++ +G g+W+ I+r+ g++R +k+c++rw +yl XP_009127225.1 45 RGLWKPEEDMILRSYIDTHGEGNWADISRRSGLKRGGKSCRLRWKNYL 92 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.6e-16 | 98 | 143 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l XP_009127225.1 98 RGGMTPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 143 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.409 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 43 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-9 | 48 | 92 | No hit | No description |
PROSITE profile | PS51294 | 25.027 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 98 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 100 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-11 | 101 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLELKLETRA RYAHFIANTA SLSNCGGQRR RMEKREEGRK THVKRGLWKP EEDMILRSYI 60 DTHGEGNWAD ISRRSGLKRG GKSCRLRWKN YLRPNIKRGG MTPQEQDLII RMHKLLGNRW 120 SLIAGRLPGR TDNEVKNYWN THLNKKSSSR KQNAAESVEA TPLVDKPVMS TEVRGSHGGG 180 EGEEGTTTTW MEETNFFARI ESPQPLTAHY PDTLCFDPSF AFTDCFPLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 43 | 146 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127225.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127225.1 | 1e-172 | PREDICTED: transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 1e-109 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A3P6AD11 | 1e-146 | A0A3P6AD11_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E1F4 | 1e-146 | M4E1F4_BRARP; Uncharacterized protein | ||||
STRING | Bra022602.1-P | 1e-147 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-96 | myb domain protein 82 |