PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127181.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 352aa    MW: 39724.6 Da    PI: 4.2961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19121170255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  XP_009127181.1 121 KFRGVRQRP-WGEWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 170
                     89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-29120178IPR001471AP2/ERF domain
PfamPF008471.8E-11121170IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20121179IPR016177DNA-binding domain
SMARTSM003801.4E-37121184IPR001471AP2/ERF domain
CDDcd000181.15E-32121177No hitNo description
PROSITE profilePS5103223.42121178IPR001471AP2/ERF domain
PRINTSPR003679.0E-10122133IPR001471AP2/ERF domain
PRINTSPR003679.0E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEEYMDLRPL KYTEHKTSVT KYLSGETRPD SVRTVRVSMT DPYATDSSSD EEEDFLFPRR  60
RVKRFVNEIK VEPGCNNINI NITGVSMKER KRLSDETQSP AASNRHRSLK VSVSSGQNGR  120
KFRGVRQRPW GEWAAEIRDP EQRRRIWLGT FETAEEAAVV YDNAAIRLRG PDALTNFSVP  180
PQSQEDESEP EQPVIDKPES IITTTTTTTS SSESTEDFQH ISSPTSVLNL QSSEEMQQIQ  240
QPCKSAKPEP ESSDAPWWHT RFSTGSSESD DSFPLDTSFL DNYFNESPPE ISIFDQPMGQ  300
VFSGNDDIFG DMFLGGQSSM NIDDEFTSSS IKDIGSMFSD FDDSLISELL VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22119185370ATERF1
3gcc_A5e-22119185370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127181.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127181.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-153CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLM4E1J30.0M4E1J3_BRARP; Uncharacterized protein
STRINGBra022643.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-152cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]