PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009126765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 524aa MW: 58986 Da PI: 6.4639 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.4e-15 | 22 | 101 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ ++p +f+++h + k++s++l+l++ s rsWev+l ++++ +++GWk+F +g++ D++ F++dg++ f +v+ f XP_009126765.1 22 QNSIPTIPDSFISNHVKGKTQSTKLKLTSdVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDDVLSFRHDGDMVF--HVTPFG 101 556679*********66678999****998999*******..8888....9************************99999..777665 PP | |||||||
2 | B3 | 66.1 | 5.1e-21 | 180 | 273 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++s++l ++++ +++kfa+ +g+k ++ ++ l +e+g+sW+++l+++k+ g+ ++ +GW +F++ ng+k+g + Fkl++ +++++v++++ XP_009126765.1 180 THVTSSNLGRNQMGISNKFARPNGLKDRQ-CEIDLLNEEGKSWTLELRHNKTTGQSYMCRGWTSFCQGNGIKAGSACRFKLVK-NGTKPVLQLCP 272 67899******************999765.6******************99999999999*********************98.78889999987 PP S CS B3 99 k 99 + XP_009126765.1 273 N 273 5 PP | |||||||
3 | B3 | 41.7 | 2.1e-13 | 313 | 403 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 ++++l++g+l+lp fa+++g+++++ ++t+ +++g +W++ l k++g+++++ G k+ +ang+k +gD++++ +++ ++++ +k+++k XP_009126765.1 313 FKPHMLRTGQLRLPTLFARDNGINEAG--EITIVNKDGVEWKLHLVSVKGRGQFYIR-GFKDCSRANGIKkVGDSFTLDVVR-GGTSPILKICSK 403 67899*****************99877..79999***********999999999999.***********99********887.88899*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.0E-16 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-14 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-10 | 13 | 100 | No hit | No description |
SMART | SM01019 | 2.4E-13 | 15 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-8 | 27 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-21 | 172 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.8E-27 | 177 | 274 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.00E-18 | 177 | 272 | No hit | No description |
PROSITE profile | PS50863 | 13.493 | 177 | 273 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-20 | 177 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.3E-20 | 179 | 273 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-8 | 306 | 403 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-14 | 308 | 404 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.092 | 308 | 404 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-9 | 311 | 402 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.5E-13 | 312 | 403 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.22E-9 | 314 | 402 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MVDPVMVSSN NKPIFFIDLS GQNSIPTIPD SFISNHVKGK TQSTKLKLTS DVSDRSWEVE 60 LDGQRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVTPF GRSFSHQIQF ISSTSEDENK 120 DDEHNIFDDD VYDEEEEHAD AGNDDDDDGD STSEEELFPS SKKKAITETE TSLEDSYLVT 180 HVTSSNLGRN QMGISNKFAR PNGLKDRQCE IDLLNEEGKS WTLELRHNKT TGQSYMCRGW 240 TSFCQGNGIK AGSACRFKLV KNGTKPVLQL CPNTSTILHK KRDVPETEGD EIEYEDCLET 300 PQMNQNRTVA IEFKPHMLRT GQLRLPTLFA RDNGINEAGE ITIVNKDGVE WKLHLVSVKG 360 RGQFYIRGFK DCSRANGIKK VGDSFTLDVV RGGTSPILKI CSKTTNRRPS RMIQAPRAEE 420 EMETRVQKKA RVSAEGGSSR RTRASNKLSV GPANLQHKKP LEPCSISDQV SKVRQSIVHT 480 LTDVRQFRSE LEIKEQNLET SLLEIDALGE KILGISKFFN VNQV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009126765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189217 | 0.0 | AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126765.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM4 isoform X2 | ||||
Swissprot | Q9SB79 | 0.0 | REM4_ARATH; Putative B3 domain-containing protein REM4 | ||||
TrEMBL | M4D484 | 0.0 | M4D484_BRARP; Uncharacterized protein | ||||
STRING | Bra011288.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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