PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126756.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 532aa    MW: 59862.9 Da    PI: 6.3591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-15221011298
                     HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++++ ++p +f+++h + k++s++l+l++  s rsWev+l  ++++    +++GWk+F   +g++  D++ F++dg++ f  +v+ f 
  XP_009126756.1  22 QNSIPTIPDSFISNHVKGKTQSTKLKLTSdVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDDVLSFRHDGDMVF--HVTPFG 101
                     556679*********66678999****998999*******..8888....9************************99999..777665 PP
2B366.15.2e-21180273499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + ++s++l ++++ +++kfa+ +g+k ++  ++ l +e+g+sW+++l+++k+ g+ ++ +GW +F++ ng+k+g  + Fkl++ +++++v++++ 
  XP_009126756.1 180 THVTSSNLGRNQMGISNKFARPNGLKDRQ-CEIDLLNEEGKSWTLELRHNKTTGQSYMCRGWTSFCQGNGIKAGSACRFKLVK-NGTKPVLQLCP 272
                     67899******************999765.6******************99999999999*********************98.78889999987 PP

                     S CS
              B3  99 k 99 
                     +
  XP_009126756.1 273 N 273
                     5 PP
3B341.62.2e-13313403699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 
                      ++++l++g+l+lp  fa+++g+++++  ++t+ +++g +W++ l   k++g+++++ G k+  +ang+k +gD++++ +++  ++++ +k+++k
  XP_009126756.1 313 FKPHMLRTGQLRLPTLFARDNGINEAG--EITIVNKDGVEWKLHLVSVKGRGQFYIR-GFKDCSRANGIKkVGDSFTLDVVR-GGTSPILKICSK 403
                     67899*****************99877..79999***********999999999999.***********99********887.88889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-168103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1410103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.95511103IPR003340B3 DNA binding domain
CDDcd100171.12E-1013100No hitNo description
SMARTSM010192.4E-1315103IPR003340B3 DNA binding domain
PfamPF023621.5E-82795IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21172273IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-27177274IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-20177275IPR015300DNA-binding pseudobarrel domain
CDDcd100179.97E-19177272No hitNo description
PROSITE profilePS5086313.493177273IPR003340B3 DNA binding domain
PfamPF023624.4E-20179273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-8306402IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-15308404IPR003340B3 DNA binding domain
PROSITE profilePS508638.134308404IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-9311403IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-13312403IPR003340B3 DNA binding domain
CDDcd100171.19E-9314402No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVDPVMVSSN NKPIFFIDLS GQNSIPTIPD SFISNHVKGK TQSTKLKLTS DVSDRSWEVE  60
LDGQRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVTPF GRSFSHQIQF ISSTSEDENK  120
DDEHNIFDDD VYDEEEEHAD AGNDDDDDGD STSEEELFPS SKKKAITETE TSLEDSYLVT  180
HVTSSNLGRN QMGISNKFAR PNGLKDRQCE IDLLNEEGKS WTLELRHNKT TGQSYMCRGW  240
TSFCQGNGIK AGSACRFKLV KNGTKPVLQL CPNTSTILHK KRDVPETEGD EIEYEDCLET  300
PQMNQNRTVA IEFKPHMLRT GQLRLPTLFA RDNGINEAGE ITIVNKDGVE WKLHLVSVKG  360
RGQFYIRGFK DCSRANGIKK VGDSFTLDVV RGGTSPILKI CSKEATFDGK QTTNRRPSRM  420
IQAPRAEEEM ETRVQKKARV SAEGGSSRRT RASNKLSVGP ANLQHKKPLE PCSISDQVSK  480
VRQSIVHTLT DVRQFRSELE IKEQNLETSL LEIDALGEKI LGISKFFNVN QV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126756.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X1
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLM4D4840.0M4D484_BRARP; Uncharacterized protein
STRINGBra011288.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]