PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126475.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 941aa    MW: 103872 Da    PI: 6.9653
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-165693299
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +  + +++l+++++r+
  XP_009126475.1  5 C-QELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR--DGKAQLLLGIRRA 69
                    4.48999*********************************************5..4678889999997 PP
2Auxin_resp116.32.6e-3894176183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+ S+Wr+L+
  XP_009126475.1  94 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 176
                     799******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.801170IPR003340B3 DNA binding domain
SMARTSM010190.008170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-24283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-21297IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-11368No hitNo description
PfamPF023626.9E-14569IPR003340B3 DNA binding domain
PfamPF065072.0E-3394176IPR010525Auxin response factor
PfamPF023091.4E-9812900IPR033389AUX/IAA domain
PROSITE profilePS5174526.956814907IPR000270PB1 domain
SuperFamilySSF542777.85E-9827892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MQPPCQELVA KDIHDNTWTF RHIYRGQPKR HLLTTGWSVF VSNKRLFAGD SVLFIRDGKA  60
QLLLGIRRAN RQQPALSSSV ISSDSMHIGV LAAAAHANAN NSPFTIFYNP RAAPAEFVVP  120
LAKYTKAMYA QVSLGMRFRM IFETEECGVR RYMGTVTGIS DLDPVRWKSS QWRNLQIGWD  180
ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFAGQPG MPDDETDMES ALKRAMPWLD  240
NGLEMKDSSS SIFPGLSLVQ WMSMQQQNGQ LPSSAAAAQS GFFPSMLPPA TGMHNNLGGT  300
DDPSKLLSFQ TPPGGISSAN LQFNKPNPQA SMSQLPQPPT TLSQQQQLQQ LLHSSLNHQQ  360
QQSQPQQQQT LQQQHHQPLH QQTQQLQQQQ QQLQSHPHPQ PQSQSQPQQL QPHQLQQFQL  420
PQNQPYNSQQ AAQQHQAQQA SMHHLQPPVV SVSMASSVIV PPSSSLNQNC QQQQQQSTQL  480
QHTHRHLGAS TSQSNVVETS KSSSSNPMSI PPHDTQFPRQ LEQQQPPVLV NGPNQQHKAQ  540
QTHQQMFQQS LLEQPHLQFQ LLQRLQQQQQ QFLMPGSSSL QSQLLHQQLQ QPPPQMLVSR  600
PQDKQNPLVG GGGVKAYSGI TDGGDAPSSS TSPSTNNCQI SSSTFLNRTQ SGPPTLMPDA  660
AVDISGSLVQ DLYSKSDMRL KHELAGPQKS KASLTDHHHQ LEASASGTSF LAPTFGLDSD  720
SRNSLLGGGA NVDNGFVPDT LLSRGYDSQK DLQNMLSNYG GVTNDIGTEM STSAIRTQSF  780
GIPNVPAISN DVAVNDAGGV LGGGLWPTQT QRMRTYTKVQ KRGSVGRSID VNRYRGYDEL  840
RHDLARMFGI EGQLEDPQTS DWKLVYVDHE NDILLVGDDP WEEFVNCVQS IKILSSAEVQ  900
QMSLDGNFAG VPVTNQACSG GDSGNAWRGH YDDNSATSFN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-952197192388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.181521e-151leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794700.0JN979470.1 Brassica rapa subsp. pekinensis auxin response factor 7-2 (ARF7-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126474.10.0PREDICTED: auxin response factor 7 isoform X1
TrEMBLH9B4D10.0H9B4D1_BRARP; Auxin response factor
STRINGBra020125.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein