PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009126437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 374aa MW: 41911 Da PI: 6.1178 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23 | 1.4e-07 | 322 | 355 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_009126437.1 322 KWPYPTEEDKAKLVEETGLQLKQINNWFINQRKR 355 579*****************************87 PP | |||||||
2 | ELK | 26.9 | 1.1e-09 | 276 | 297 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ XP_009126437.1 276 ELKHELKQGFKEKIVDIREEIM 297 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-18 | 111 | 155 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.3E-17 | 113 | 154 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-25 | 162 | 217 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.8E-19 | 167 | 216 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.446 | 276 | 296 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.8E-6 | 276 | 297 | IPR005539 | ELK domain |
SMART | SM01188 | 6.2E-4 | 276 | 297 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.969 | 296 | 359 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-15 | 298 | 363 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.8E-10 | 298 | 363 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-11 | 299 | 355 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 303 | 361 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-17 | 316 | 355 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009727 | Biological Process | detection of ethylene stimulus | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSFTSSHLLP PQEDLPLRHF SDQSHQHPQP HFSETPSLLT ATFLNLPPAA ATADSDFAPP 60 NRGGDSSSAA AATNRRWLSF DSSEIQNTGE GPPEVIDGVN ADGGGEDWKS ASCKAAIVRH 120 PMFEQLLAAH VACLRVATPV DQIPRIDAQL SELHTVAAKY STLGVVMDNK ELDHFMSHYV 180 VLLCSFKEQL QHHVCVHAME AITACWEIEQ SLQSITGVSP SENNGKTMSD DEDDNQVESE 240 VNMFDGSLDG SDCMMGFGPL VPTERERSLL ERVKKELKHE LKQGFKEKIV DIREEIMRKR 300 RAGKLPGDTT SVLKEWWRTH AKWPYPTEED KAKLVEETGL QLKQINNWFI NQRKRNWNSN 360 SSTSSTPSKN KRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 373 | RKRNWNSNSSTSSTPSKNKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.6450 | 1e-180 | leaf| root| seed| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009126437.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352580 | 0.0 | AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126429.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | M4D4B3 | 0.0 | M4D4B3_BRARP; Uncharacterized protein | ||||
STRING | Bra011317.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 0.0 | KNOTTED1-like homeobox gene 5 |