PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126429.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 378aa    MW: 42284.4 Da    PI: 6.2359
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-073223552154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009126429.1 322 KWPYPTEEDKAKLVEETGLQLKQINNWFINQRKR 355
                     579*****************************87 PP
2ELK26.81.2e-09276297122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  XP_009126429.1 276 ELKHELKQGFKEKIVDIREEIM 297
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-18111155IPR005540KNOX1
PfamPF037905.4E-17113154IPR005540KNOX1
SMARTSM012561.4E-25162217IPR005541KNOX2
PfamPF037912.8E-19167216IPR005541KNOX2
PROSITE profilePS512139.446276296IPR005539ELK domain
PfamPF037892.9E-6276297IPR005539ELK domain
SMARTSM011886.2E-4276297IPR005539ELK domain
PROSITE profilePS5007111.969296359IPR001356Homeobox domain
SuperFamilySSF466891.63E-15298363IPR009057Homeodomain-like
SMARTSM003893.8E-10298363IPR001356Homeobox domain
CDDcd000862.96E-11299355No hitNo description
Gene3DG3DSA:1.10.10.601.9E-24303361IPR009057Homeodomain-like
PfamPF059201.8E-17316355IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSFTSSHLLP PQEDLPLRHF SDQSHQHPQP HFSETPSLLT ATFLNLPPAA ATADSDFAPP  60
NRGGDSSSAA AATNRRWLSF DSSEIQNTGE GPPEVIDGVN ADGGGEDWKS ASCKAAIVRH  120
PMFEQLLAAH VACLRVATPV DQIPRIDAQL SELHTVAAKY STLGVVMDNK ELDHFMSHYV  180
VLLCSFKEQL QHHVCVHAME AITACWEIEQ SLQSITGVSP SENNGKTMSD DEDDNQVESE  240
VNMFDGSLDG SDCMMGFGPL VPTERERSLL ERVKKELKHE LKQGFKEKIV DIREEIMRKR  300
RAGKLPGDTT SVLKEWWRTH AKWPYPTEED KAKLVEETGL QLKQINNWFI NQRKRNWNSN  360
SSTSSTPSKN KRKRTGKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352373RKRNWNSNSSTSSTPSKNKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.64501e-180leaf| root| seed| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126429.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLM4D4B30.0M4D4B3_BRARP; Uncharacterized protein
STRINGBra011317.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5