PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126392.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 682aa    MW: 76790.9 Da    PI: 5.7401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-172979656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++q++ Le++F+++++p++++r++  ++l+L  +qVk+WFqN+R++ k
  XP_009126392.1 29 RHSPQQIQMLEAYFKECPHPNESQRQKFCNELNLGIDQVKFWFQNKRTQSK 79
                    689*********************************************988 PP
2START103.53.7e-332094276206
                     HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     a +el ++ l +e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld   +W+  ++    kae++ ++ s
  XP_009126392.1 209 AVEELKQLFLTDEALWVMSSidgTYVIDQESYEKFSHSIKhfrnlsARVESSKDVTVVPIEATSLIDMFLDLE-KWKMLFPtivnKAEMIHTLGS 302
                     56788899999*********988777788888888776668899999****************7777777766.99999988899********** PP

                     T.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  88 g.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                             ++lq +  +l  lsplvp R+f++vR+++q g+g w+i+dvS    ++ + s+s+ +   +pSg+li++++n h++v w+ehv+++ 
  XP_009126392.1 303 ElpikencNVLQMIWEQLHILSPLVPpREFMIVRCCQQIGEGLWIIADVSQHIVNSDQVSPSCYK---RPSGCLIRSLPNAHTEVSWIEHVEVDH 394
                     **************************************************887777776777766...**************************9 PP

                     SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlp.hwllrslvksglaegaktwvatlqrqcek 206
                         h ++r lv+ g   ga++w  tl+r ce+
  XP_009126392.1 395 TADtHRMYRELVSGGSGYGARRWIVTLERMCER 427
                     9988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-17679IPR009057Homeodomain-like
SuperFamilySSF466892.74E-161281IPR009057Homeodomain-like
PROSITE profilePS5007115.4022181IPR001356Homeobox domain
SMARTSM003891.6E-132185IPR001356Homeobox domain
CDDcd000867.75E-142281No hitNo description
PfamPF000465.0E-152979IPR001356Homeobox domain
PROSITE profilePS5084836.806195430IPR002913START domain
SuperFamilySSF559612.06E-24198428No hitNo description
CDDcd088752.77E-83200426No hitNo description
SMARTSM002341.8E-16204427IPR002913START domain
PfamPF018527.7E-27209427IPR002913START domain
Gene3DG3DSA:3.30.530.204.4E-5211390IPR023393START-like domain
SuperFamilySSF559613.43E-7449642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MDYDGAGNQD NEHYTSVNAM SKEKRICHRH SPQQIQMLEA YFKECPHPNE SQRQKFCNEL  60
NLGIDQVKFW FQNKRTQSKA QDERTSNILL RAENEKLQCE NAAMLEALKN VTCPPCGGPP  120
FGGEEREPNL HKLRLEGDSL VAAKNKYRQT MLDSLTSVQR QQTFEALTSY GTNPYNPFEQ  180
PSSSESQTIQ PQLLSQMDIP QLSETAAIAV EELKQLFLTD EALWVMSSID GTYVIDQESY  240
EKFSHSIKHF RNLSARVESS KDVTVVPIEA TSLIDMFLDL EKWKMLFPTI VNKAEMIHTL  300
GSELPIKENC NVLQMIWEQL HILSPLVPPR EFMIVRCCQQ IGEGLWIIAD VSQHIVNSDQ  360
VSPSCYKRPS GCLIRSLPNA HTEVSWIEHV EVDHTADTHR MYRELVSGGS GYGARRWIVT  420
LERMCERMAL SSILIMPATD WSETIPTVEG RKSVMKLGER MVKIFSEMLI MSGKIEFPQQ  480
SKGGVRILIR MNMKPGQIPG LVASAASCLS IPLTPLQVFN SLRSNDTRHQ WDVLCHGNAI  540
TETARIFTGS SGTNYINLLQ PTPPWDIGQN MVQEPHKTMM VLQECYMDAL GGMIVYSPLD  600
MATMSIAASG EVDPLNIPIL PSGFTISSDN NRGTVLMLAF QILISDENSK TRNVSENTAD  660
KVSRLISQTV QSIKVMLNCP PE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126392.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLM4DU730.0M4DU73_BRARP; Uncharacterized protein
STRINGBra020066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8