PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 28404.8 Da    PI: 8.3046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182272155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  XP_009126390.1 22 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 72
                    699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-332282No hitNo description
PfamPF008475.1E-132272IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192380IPR016177DNA-binding domain
PROSITE profilePS5103219.8232380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282381IPR001471AP2/ERF domain
SMARTSM003807.0E-392386IPR001471AP2/ERF domain
PRINTSPR003674.1E-82435IPR001471AP2/ERF domain
PRINTSPR003674.1E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEQKTTQKKK TKEKSKDNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA  60
RAYDEAACLL RGSNTRTNFA NHFPNNSPLS LKIRNLLYQK QSMKQQQKQQ NKHISSIAEC  120
NINYTSPATS PTASTTTTMM PLNDVYRPDS TIISQPETES IHLPYSCPFV SGFNHQVPMT  180
HGGEETQGHL NNQYSTDQHL GLADIEREIS ASLYAMNGAT YYNNTNAEYA IFDPTDPIWD  240
LPSLSQLFCP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-152079262ATERF1
3gcc_A5e-152079262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126390.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_013721971.10.0ethylene-responsive transcription factor RAP2-11
SwissprotQ6J9S11e-132RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A078I7210.0A0A078I721_BRANA; BnaA02g04480D protein
TrEMBLM4DU700.0M4DU70_BRARP; Uncharacterized protein
STRINGBra020063.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-107related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]