PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126264.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 433aa    MW: 46463.1 Da    PI: 8.5613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-113660327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG C yG+rC+F+H++
  XP_009126264.1 36 EPDCVYYLRTGVCGYGSRCRFNHPR 60
                    689********************96 PP
2zf-CCCH37.34.6e-1281106227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtC++G++Ck++H++
  XP_009126264.1  81 GQPVCQHFMRTGTCRFGATCKYHHPR 106
                     5789********************96 PP
3zf-CCCH39.96.8e-13129153226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_009126264.1 129 GEKECSYYMRTGQCKFGSTCRFHHP 153
                     7899********************9 PP
4zf-CCCH41.22.8e-13278303126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+F+H+
  XP_009126264.1 278 PGQPECQYFMRTGDCKFGNSCRFHHP 303
                     5789*********************9 PP
5zf-CCCH33.66.7e-11323349127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t+ C++fa+ G Ck+G+ CkF H++
  XP_009126264.1 323 PGTAQCSHFAQHGVCKFGPACKFDHSM 349
                     689**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5823361IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-53460IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-83660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-53960IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.94879107IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-679106IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-981106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-681107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-584106IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6127154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356127155IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10129153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4133152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07277305IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7277304IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10279303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5283303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6322350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22322350IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5322349IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8323348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4326349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDRYDPALET GLEASMWRLG LRGGGGGELY PERLDEPDCV YYLRTGVCGY GSRCRFNHPR  60
NRSPVLGGLR TEAGEFPERM GQPVCQHFMR TGTCRFGATC KYHHPRQGGR DSVTALTSLS  120
YMGLPLRPGE KECSYYMRTG QCKFGSTCRF HHPVPPGVQA PSLQLSTGSA IYPPLHSQSV  180
PSPQQFGVAI PRPQLLQGSY VQSPYGTYNQ MVLPPPGMVP YSGWNPYQAS SISAMPSHGS  240
QPSMGSSSVY GIRPSSPPAP AYPPGSSSNK EQTFPQRPGQ PECQYFMRTG DCKFGNSCRF  300
HHPLEAASPK GVNLSPIGLP IRPGTAQCSH FAQHGVCKFG PACKFDHSMS SSSLSYSPSA  360
SSVSDMHVVP YPLGSSSLGI SAPSSSSSLS DQRTELHSSS SIKPTNTTSG GSETLPAETR  420
TGDSASIEVK TSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.166012e-69bud| flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126264.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM4E4I00.0M4E4I0_BRARP; Uncharacterized protein
STRINGBra023683.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]