PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126227.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 342aa    MW: 38951.3 Da    PI: 4.5235
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-1819110196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ + ++p + +++++ +  +s++++l+ ++g  W+vk+  +k+++  y+  +GW++Fv++n L e++ ++F+++g+++f  +v
  XP_009126227.1  19 FFKILRREDLSSQLIRMIPHDIIRSISDD-SSSFKMVLKVPWGSLWTVKI--SKNPSFhYMEDDGWNQFVNDNALGENEYLTFTHEGNMRF--NV 108
                     99***********999**********766.5899****************..99999957777***********************99999..55 PP

                     EE CS
              B3  95 kv 96 
                      +
  XP_009126227.1 109 NI 110
                     55 PP
2B336.96.7e-122212981699
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l +pk f+e h+ kk++    +++ e   sW+v +    ++ +  +++GW++  ++ gL +gD+++Fkl++   +e++vkv r+
  XP_009126227.1 221 LGVPKVFVEMHMAKKTK--WFKIRPEGKDSWDVLF--LVTDAQSRFSAGWSRLSRELGLVVGDVCTFKLIK--PTEMLVKVSRH 298
                     679********988666..677779999*******..555555569**********************987..77789999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2015118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-1317111No hitNo description
PfamPF023621.7E-1519110IPR003340B3 DNA binding domain
SMARTSM010192.4E-2119114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77419114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785206299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14206298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17206298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-11207293No hitNo description
SMARTSM010197.1E-13209299IPR003340B3 DNA binding domain
PfamPF023624.2E-8220298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG  60
SLWTVKISKN PSFHYMEDDG WNQFVNDNAL GENEYLTFTH EGNMRFNVNI YGPDGTEMLR  120
PRESATIASS SGMNKREQRE GVYKHVKEEI VSSSESSYYS LKNAQGKKQE LNLGKKKAEE  180
SKKPKKSMKK KKKVDSDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMAKKTKWFK  240
IRPEGKDSWD VLFLVTDAQS RFSAGWSRLS RELGLVVGDV CTFKLIKPTE MLVKVSRHDD  300
DDDEDDIEGD DVSDEEEAED ADEDDSDDED AEDEDDADES ED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192KKKAEESKKPKKSMKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126227.10.0PREDICTED: B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-132Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A3P6CLR21e-180A0A3P6CLR2_BRAOL; Uncharacterized protein
STRINGBra023652.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-121VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]