PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126142.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 442aa    MW: 49109.6 Da    PI: 4.5186
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.7e-36271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ 
  XP_009126142.1  27 FLSKTYDMVDDPSTNEIVSWSSGNNSFVVWNVPEFSKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRGQKQLLKG 112
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_009126142.1 113 IVRRKPQ 119
                     ***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3822110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.21E-3423116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-5923116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MESVQSAPSA NSNSPSIPPP VSSVPPFLSK TYDMVDDPST NEIVSWSSGN NSFVVWNVPE  60
FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE GFLRGQKQLL KGIVRRKPQN  120
QQQTQVQNSS VSACVEVGKF GIEEEVERLK RDKNVLMQEL VGLRQQQQAT EHQLQNVGQK  180
VQVMEQRQQQ TMSFLAKAVQ SPGFLNQLVQ QNSDGNKHIQ GSNKKRRLPG DEEESCGELN  240
RQIVRYQPSI NEAAQTMLRQ VLNRSSSPVS NNPESFLLSD APSSNSPNSA HSAMNQVHEA  300
GLVDHPQAVP SPSQGGVAAA SFWSPESELV GLETGDGVCF DPIMAALGGS LEIESDEVSP  360
LGEGEMTELQ NEVPKLPGVQ DSFWEQFFAD ETAVIGEGDV IISEAVENCE MVMEQEPKEW  420
KQQEMNHLTE QMELLSSEAQ RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-262211615120Heat shock factor protein 1
5d5u_B1e-252211624129Heat shock factor protein 1
5d5v_B1e-252211624129Heat shock factor protein 1
5d5v_D1e-252211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126142.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126142.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLM4E4810.0M4E481_BRARP; Uncharacterized protein
STRINGBra023584.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]