PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126127.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 319aa    MW: 36094.1 Da    PI: 5.4176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
   XP_009126127.1 14 KGPWTVEEDKKLINFILTNGQCCWRALPKLSGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.22.9e-1671112548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++ E++  +d+++qlG++ W++Ia+ ++ gRt++++k++w++++
   XP_009126127.1  71 SENEEQMVIDLHAQLGNR-WSKIASNLP-GRTDNEIKNHWNTHR 112
                      789***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19563IPR009057Homeodomain-like
PROSITE profilePS5129412.65961IPR017930Myb domain
SuperFamilySSF466894.87E-2611108IPR009057Homeodomain-like
SMARTSM007173.1E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
CDDcd001671.23E-71661No hitNo description
PROSITE profilePS5129426.24362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2364116IPR009057Homeodomain-like
SMARTSM007171.0E-1366114IPR001005SANT/Myb domain
PfamPF002495.7E-1470112IPR001005SANT/Myb domain
CDDcd001673.20E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTVE EDKKLINFIL TNGQCCWRAL PKLSGLLRCG KSCRLRWINY  60
LRPDLKRGLL SENEEQMVID LHAQLGNRWS KIASNLPGRT DNEIKNHWNT HRKKKLRKMG  120
IGPMAHKPLS EQDGAQQQAQ GRKKSLVSRD EKNTNQGQED QQQTRKEEDQ QHQLGKDLEK  180
NNTPISTDDG FCIDDIPLLS PHEIFVDIPS AHHHTSDDNA NINISNSTSP SSSSSSTSSC  240
ISSLPGDEFS KFLDEMEIVD LKWLSSDDSS GGNINYNDGK FNNNVDTMSL WDINDLSSLE  300
LFMNDHDDSV VEADVQEWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.287810.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747510.0KF974751.1 Brassica napus MYB transcription factor 43-1 (MYB43-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126127.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A3P6ADG10.0A0A3P6ADG1_BRACM; Uncharacterized protein
STRINGBo2g013190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-147myb domain protein 43