PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126033.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 310aa    MW: 35933.9 Da    PI: 6.6041
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-18115167456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  XP_009126033.1 115 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 167
                     4568889*********************************************9 PP
2HD-ZIP_I/II128.43e-41113204192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el 
  XP_009126033.1 113 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 204
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.52E-19101171IPR009057Homeodomain-like
SMARTSM003892.6E-17112173IPR001356Homeobox domain
PROSITE profilePS5007116.552113169IPR001356Homeobox domain
CDDcd000864.69E-16114170No hitNo description
PfamPF000463.2E-15115167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-19117177IPR009057Homeodomain-like
PRINTSPR000311.1E-5140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5149165IPR000047Helix-turn-helix motif
PfamPF021836.5E-15169208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MYMYEEERNN IVNNQEELRL EMAFPQHGFM FQQLHEENAH HLPSPTSLPS CPPHLFYGGG  60
GDYMMNRSMS FTGVSDHHHL TQKSPTTTNM NDHDQLGEED NLSDDGSHMM LGEKKKRLNL  120
EQVRALEKSF ELGNKLEPER KMQLAKALGL QPRQIAIWFQ NRRARWKTKQ LERDYDSLKK  180
QFDVLKSDND SLLAHNKKLH AELVALKKQD RKEPSKIKRE LAEASWSNNE GTDNNNNNNS  240
DINHVNMIKD LFPSSVRSAT TTTTSSHIDH QMVQDQGFCN MFNGIDETTS AGYWAWSDQQ  300
QQHQSHHQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126033.10.0PREDICTED: homeobox-leucine zipper protein HAT7
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A398A6H40.0A0A398A6H4_BRACM; Uncharacterized protein
STRINGBra023506.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-158homeobox 3