PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126032.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 516aa    MW: 55318.3 Da    PI: 7.5646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30216275159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  XP_009126032.1 216 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 275
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31201277IPR003657WRKY domain
SuperFamilySSF1182901.57E-27209277IPR003657WRKY domain
PROSITE profilePS5081128.69211277IPR003657WRKY domain
SMARTSM007749.3E-37216276IPR003657WRKY domain
PfamPF031064.2E-27217275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLTVKDHG SAKIHEAIKG DGDHQELESA KAEMSEVKQE NEKLKGMLER  60
IESDYKSLKL RLFDVIQHEP SNNPTHQSVV DLRTDLSSLD QEGELVSFSL GRRSSSPSDN  120
TSKKEEKADA ITKEVNSDEE LTKAGLTLGF NNGNDREPNK SLSIVDSLEE ASKVTGKRSS  180
PSPLASGGDA DGEAGQQNNV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY  240
RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHPLPLSA TTMASTTSAA ASMLLSGSSS  300
SSAAKMIGNN LYDSSRFINN SKSFYAPTLH SPLHPTVTLD LTAPQHSSSS SLPSLNFNKI  360
SNSFQRFPST NLNFSSSSSY TPYPYNNVQF GGSNLGKTAQ NSQSLTETLT KVLTSDPSFH  420
SVVAAAISSM VGSNGEQQIA GPRPSISNSI QPTAATNNNK GCGGYFSSLL TSNIITNNQM  480
GASLGQPSSQ LPPLSVFNHP SSSSSTATFV NKDEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21203277174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892320.0AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126032.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLM4E4020.0M4E402_BRARP; Uncharacterized protein
STRINGBra023505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72