PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009125795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 41148.9 Da PI: 4.7881 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.1 | 5.1e-34 | 26 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ++pGfrF+Ptdeel+++yLk+kv++k++ l + i ev +yk +P+dLp +k+k++e+ew+fF++ +k y + + r+t++g W++ g++k++ XP_009125795.1 26 MAPGFRFNPTDEELISYYLKRKVQRKPIAL-DPIGEVAVYKQeDPSDLPdqSKMKTTEREWFFFTTLEK-YGDSGYAVRSTAKGNWRERGREKKI 118 579*************************99.89*****999868****96448888999*****99866.77888899999************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g +k Lvf+ + + t+Wv+hey+l XP_009125795.1 119 KRGgDDQVIGNRKRLVFF----TNNQATNWVIHEYQL 151 *9877788**********....344579*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-37 | 24 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.411 | 26 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-23 | 28 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRGLTTDGV LPASEAVLTT ATGRPMAPGF RFNPTDEELI SYYLKRKVQR KPIALDPIGE 60 VAVYKQEDPS DLPDQSKMKT TEREWFFFTT LEKYGDSGYA VRSTAKGNWR ERGREKKIKR 120 GGDDQVIGNR KRLVFFTNNQ ATNWVIHEYQ LVDNDGHVQT DAYVLCRLFD SSGSINAPFS 180 EQEWDDADNE KIQKASNSRS MNLFDLNELP REFEIDDDDS KAVDQDDNNN DACLLPCVLN 240 KEAPLPFVRY RRKRQLDSDN SIQTTPKTTS GTTIPYVAAL LERSEPEPVD ATMVVPTSSY 300 NEELIKDLHK ERQQIAVERE RYKLEMTNAE MTISDLVGKN DALRTEIEEL KKKNSNKEQG 360 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-23 | 26 | 174 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-23 | 26 | 174 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-23 | 26 | 174 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-23 | 26 | 174 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-23 | 26 | 174 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 4e-23 | 26 | 174 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-23 | 26 | 174 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009125795.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189393 | 0.0 | AC189393.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054O10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125795.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like | ||||
TrEMBL | M4E3G2 | 0.0 | M4E3G2_BRARP; Uncharacterized protein | ||||
STRING | Bra023314.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18736 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 4e-61 | NAC domain containing protein 52 |