PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125779.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 122aa    MW: 13692.1 Da    PI: 8.3406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.78.2e-1392116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk elC  fa+ G+C+yGdrC+FaHg
  XP_009125779.1  92 YKSELCEKFAA-GECNYGDRCHFAHG 116
                     9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1370.105.6E-62778IPR004088K Homology domain, type 1
SuperFamilySSF547911.36E-62778IPR004088K Homology domain, type 1
CDDcd001050.005662868No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-1589121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-890121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46991118IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-891117IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-1092116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDTHKRGHSD TVSSSNSNVG FKRPKQDGNR TKQICRETGV KLPIVDHERG PNLKNVEIDG  60
NYDQINEANG RMRELIRRFG SDPANSAPRS SYKSELCEKF AAGECNYGDR CHFAHGVAEL  120
RD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718827.11e-74zinc finger CCCH domain-containing protein 52-like
RefseqXP_018512202.11e-74PREDICTED: zinc finger CCCH domain-containing protein 52-like
SwissprotQ9FG304e-31C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLM4EIV46e-80M4EIV4_BRARP; Uncharacterized protein
STRINGBra028719.1-P1e-80(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2156134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-33C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]