PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125735.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 278aa    MW: 29831 Da    PI: 6.1712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-091156346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ e+d  + +a++ +  +    W++Ia+ ++ g++ +q+k+++  
   XP_009125735.1 11 VWSREDDIAFERAIASYTDEsdeKWEKIAADVP-GKSVEQIKEHYEV 56
                     6*****************99*************.**********965 PP
2Myb_DNA-binding42.12e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_009125735.1 115 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.951762IPR017884SANT domain
SMARTSM007176.6E-10860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-51057IPR009057Homeodomain-like
PfamPF002493.3E-81155IPR001005SANT/Myb domain
CDDcd001676.80E-91258No hitNo description
SuperFamilySSF466894.09E-101265IPR009057Homeodomain-like
PROSITE profilePS5129417.581107164IPR017930Myb domain
SuperFamilySSF466891.08E-16110165IPR009057Homeodomain-like
SMARTSM007173.2E-10112162IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-17112162IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10115158IPR009057Homeodomain-like
CDDcd001677.00E-10115160No hitNo description
PfamPF002492.4E-11115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTVEEVSDGS VWSREDDIAF ERAIASYTDE SDEKWEKIAA DVPGKSVEQI KEHYEVLVED  60
VSRIESGCVP LPAYNSPQGG SGDGDDEGGN TKKGGNSHVG ESKAKSDQER RKGIAWTEDE  120
HRLFLLGLDK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNKER RRTSIHDITS  180
VGDADVSTPQ GPITGQNNNN GSAAVVVAGG GNKSAKQGVS QPPPGPPVYG TPSIGQPVVG  240
TPVSLPTPPH MAFAAPVPGS VVPQMPYTTM PRTPTAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-16992891RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125735.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125735.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-167SRM1_ARATH; Transcription factor SRM1
TrEMBLM4EIN90.0M4EIN9_BRARP; Uncharacterized protein
STRINGBra028654.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-142MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]