PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125676.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 344aa    MW: 38774.5 Da    PI: 9.4193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29130188260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrK GqK+vkgse+prsY+rCt+++C +kkkve+s   ++v+ei+Y+g+Hnh+k
  XP_009125676.1 130 EDGYNWRKDGQKQVKGSENPRSYFRCTYPNCLTKKKVETSLVKGHVTEIVYKGSHNHPK 188
                     7********************************************************85 PP
2WRKY39.31.3e-12242271129
                     ---SS-EEEEEEE--TT-SS-E.EEEEE-S CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr.sYYrCts 29 
                     ldDgy+WrKYGqK+vkg+++pr  ++ C++
  XP_009125676.1 242 LDDGYRWRKYGQKVVKGNPNPRfCFFFCSQ 271
                     59********************44677775 PP
3WRKY54.22.8e-172853251959
                     SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +  rsYY+Ct++gC+v+k+ver+ +d k v++tYeg+Hnh+
  XP_009125676.1 285 DARRSYYKCTFTGCCVRKQVERAFHDAKSVITTYEGKHNHQ 325
                     567*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-25123189IPR003657WRKY domain
PROSITE profilePS5081122.653124189IPR003657WRKY domain
SuperFamilySSF1182903.53E-23127189IPR003657WRKY domain
SMARTSM007741.3E-30129188IPR003657WRKY domain
PfamPF031061.5E-21130187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-34227327IPR003657WRKY domain
SuperFamilySSF1182907.19E-11234271IPR003657WRKY domain
PROSITE profilePS5081129.712237327IPR003657WRKY domain
SMARTSM007745.2E-33242326IPR003657WRKY domain
PfamPF031063.6E-8243266IPR003657WRKY domain
SuperFamilySSF1182901.7E-13282327IPR003657WRKY domain
PfamPF031063.2E-11284325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASFNQQRSV PKFKSATPSP LPLSSYFSMP PGLTQADLLD SPLLFTSSNV LPSPTTGTFP  60
LESLNWKNNG LLTNRNEIKA EDGKEEHFDF AFTTIQTSPP LFLSHFQTED QRSTQVDVPK  120
FESSGNKTSE DGYNWRKDGQ KQVKGSENPR SYFRCTYPNC LTKKKVETSL VKGHVTEIVY  180
KGSHNHPKPQ FTKRSASTAA TNDVSSHQSG GEDNVDAKRG KREEAVKEPR VVVQTTSDID  240
ILDDGYRWRK YGQKVVKGNP NPRFCFFFCS QLQLQGGAYL PKTCDARRSY YKCTFTGCCV  300
RKQVERAFHD AKSVITTYEG KHNHQIPNPK KTSHLNMISD CVSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29130327877Probable WRKY transcription factor 4
2lex_A5e-29130327877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123970.0EU912397.1 Brassica napus WRKY26-1 transcription factor (WRKY26-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125676.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T31e-144WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLC4N0W20.0C4N0W2_BRANA; WRKY26-1 transcription factor
STRINGBra028707.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-147WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]