PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125647.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28878.7 Da    PI: 5.4809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93.2e-141060251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51
                    rien + r++ f +R +g++KKAeEL +LC+ ++++  f   + kl +++s
  XP_009125647.1 10 RIENPRARNTAFKRRTQGLIKKAEELTILCGLDACLTFFNlDDAKLVTWPS 60
                    8************************************99835679999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.442149IPR002100Transcription factor, MADS-box
CDDcd002668.73E-23283No hitNo description
PRINTSPR004046.9E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19395IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151058IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAKKKMKLTR IENPRARNTA FKRRTQGLIK KAEELTILCG LDACLTFFNL DDAKLVTWPS  60
KEVAESLVDR FYSLPSYERN MKAETQESFL KTNIKKIQKK LANCRVRVAE LEMEHLLFDL  120
ENGRSLDDFS QSEIESLRSY TNKRIMGLNK DLGYSEHAYT SVNEPFPGVD QTPRVLDVAL  180
EQAHCSNLMG SRCTYLMDKW FFDDPKVQED GDVTHLPKLV HRFDLNMEPS DDEEDMETYK  240
GESGKSGGAS DA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125647.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLM4EIW50.0M4EIW5_BRARP; Uncharacterized protein
STRINGBra028730.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.14e-66AGAMOUS-like 96