PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125429.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 264aa    MW: 29499 Da    PI: 7.1425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-102470447
                     S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                     WT eE +l+ +a + lG +    +W+ Ia+ ++ g++  +++ r+ k+
   XP_009125429.1 24 WTVEENKLFEKALAVLGDKddleSWSNIAALIP-GKSVDDVIKRYKKL 70
                     *********************************.***********996 PP
2Myb_DNA-binding49.97.2e-16144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
   XP_009125429.1 144 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-51270IPR009057Homeodomain-like
SuperFamilySSF466893.44E-91376IPR009057Homeodomain-like
PROSITE profilePS512938.3611973IPR017884SANT domain
SMARTSM007179.2E-62073IPR001005SANT/Myb domain
PfamPF002497.9E-92470IPR001005SANT/Myb domain
CDDcd001671.25E-82470No hitNo description
PROSITE profilePS5129422.32137193IPR017930Myb domain
SuperFamilySSF466891.59E-17139192IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18140192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-13141188IPR009057Homeodomain-like
SMARTSM007171.9E-13141191IPR001005SANT/Myb domain
PfamPF002495.2E-13144188IPR001005SANT/Myb domain
CDDcd001672.89E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSMNGGFQE NTNWIFQEVK DAMWTVEENK LFEKALAVLG DKDDLESWSN IAALIPGKSV  60
DDVIKRYKKL EDDISDIEAG LVPDPGYCSD ASAGDYFFGL ENSGYGYGYG YGYNYVVGGK  120
RSSPATSDGF KLPMPEKERK KGVPWTEEEH RRFLMGLKKY GKGDWRNIAR NFVTTRTPTQ  180
VASHAQKYFI RQLTDCKDKR RSSIHDITTV NVPDAKALAT ATPAAATVSP TPTNPFDVYF  240
PPKPHHSLAF SPASSYHNAF PQWS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125429.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_013720198.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H75e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A398A4U40.0A0A398A4U4_BRACM; Uncharacterized protein
STRINGBra028892.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-114MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]