PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125296.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 566aa    MW: 63656.9 Da    PI: 6.8958
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.6e-14265324155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k+++
  XP_009125296.1 265 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 324
                     57*******************666664478446**********99*************97 PP
2AP249.79.3e-16367418155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_009125296.1 367 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 418
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-20265334No hitNo description
SuperFamilySSF541713.66E-16265333IPR016177DNA-binding domain
PfamPF008478.4E-11265324IPR001471AP2/ERF domain
SMARTSM003803.1E-25266338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-14266332IPR001471AP2/ERF domain
PROSITE profilePS5103218.545266332IPR001471AP2/ERF domain
PRINTSPR003675.0E-6267278IPR001471AP2/ERF domain
CDDcd000183.59E-11367426No hitNo description
PfamPF008473.9E-10367418IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17367427IPR016177DNA-binding domain
PROSITE profilePS5103219.111368426IPR001471AP2/ERF domain
SMARTSM003806.3E-30368432IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18368426IPR001471AP2/ERF domain
PRINTSPR003675.0E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMDMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE  60
AQIAASMADS TILTTFVDPQ THSHNHIPKL EDFLGEVRYS DNSQTETQDS SSLTHIYDPR  120
HHQNQNQTGF YSDHNHEFKT MAGFQTAFST NSGSEVEDSA SIGRTHLAGE YLGHVVESSG  180
GPELGFHGGA NNGGALSLGV NVNNSNHRTS DDHTQITEHH YRGNNNGERI NNEKMVSEKE  240
KPVVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQV  300
YLGGYDKEDK AARAYDLAAL KYWNATATTN FPITNYSKEL EEMKHMTKQE FIASLRRKSS  360
GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN  420
AVTNFEMNRY DIEAIMKSAL PIGGAAKRLK LSLEAAEQKP ILGHQHQLHH FQQQQQQQIQ  480
SSPNHSSINF AQSQMIPCGI PFEAAALYHH QQQQQQQQQQ NFFQHFPANV QASDSTGSNN  540
NSNVQGSMGL MTPNQAEFFL WPNQSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.298700.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856830.0AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125296.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A398A6V80.0A0A398A6V8_BRACM; Uncharacterized protein
STRINGBra028584.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]