PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125259.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 393aa    MW: 44298 Da    PI: 6.3279
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073323652154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++ +L +++gL+ +q+ +WF N+R +
  XP_009125259.1 332 KWPYPTEEDKVRLVQETGLQLKQINNWFINQRKR 365
                     469*****************************87 PP
2ELK28.92.5e-10286307122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_009125259.1 286 ELKHELKQGYKEKIVDIREEIL 307
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.6E-19120164IPR005540KNOX1
PfamPF037903.8E-17123163IPR005540KNOX1
SMARTSM012569.3E-28176232IPR005541KNOX2
PfamPF037914.7E-20182231IPR005541KNOX2
PfamPF037899.0E-7286307IPR005539ELK domain
SMARTSM011886.1E-4286307IPR005539ELK domain
PROSITE profilePS512139.969286306IPR005539ELK domain
PROSITE profilePS5007111.758306369IPR001356Homeobox domain
SMARTSM003899.2E-11308373IPR001356Homeobox domain
SuperFamilySSF466894.28E-16308372IPR009057Homeodomain-like
CDDcd000864.30E-11309370No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25313370IPR009057Homeodomain-like
PfamPF059201.9E-17326365IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAFHNNHFNH FIDQQHQPPP PSQQQQEHHF HESTPPNWLL RSDNNFLNLQ TAASAAATSS  60
DSPSSAAANQ WLSRSTSFLQ RGGGANNNNV GSGDVIDDVT TGGEESMIGE RKEAERWQNA  120
RHKSEILSHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS TMDAAAQGLI  180
SGDEKELDHF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG  240
ATMSEDEDEQ VESDAHLYDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV  300
DIREEILRKR RSGKLPGDTT SVLKAWWQSH SKWPYPTEED KVRLVQETGL QLKQINNWFI  360
NQRKRNWHSN PSSSTVPKNK RRSNAGENSG RER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12309373872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125259.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A398AD570.0A0A398AD57_BRACM; Uncharacterized protein
STRINGBo2g010190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]