PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125253.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 240aa    MW: 28676.3 Da    PI: 7.4602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
   XP_009125253.1 11 RGPWLEEEDERLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWINYL 58
                     89********************************************97 PP
2Myb_DNA-binding54.43e-1765109248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++++eE+ ++ ++++++G++ W++Iar+++ gRt++q+k++w+++l
   XP_009125253.1  65 GPMSQEEEIIIFQLHALWGNK-WSKIARRLP-GRTDNQIKNYWRTHL 109
                      789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.576658IPR017930Myb domain
SuperFamilySSF466897.59E-289105IPR009057Homeodomain-like
SMARTSM007172.0E-131060IPR001005SANT/Myb domain
PfamPF002493.3E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-181265IPR009057Homeodomain-like
CDDcd001673.40E-81358No hitNo description
PROSITE profilePS5129426.359113IPR017930Myb domain
SMARTSM007179.3E-1763111IPR001005SANT/Myb domain
PfamPF002491.2E-1565109IPR001005SANT/Myb domain
CDDcd001672.52E-1066109No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2466113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDCKKEEALR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWINYLNP  60
SLKCGPMSQE EEIIIFQLHA LWGNKWSKIA RRLPGRTDNQ IKNYWRTHLR KKVEAQNYDK  120
IIDWRGNKGE ELLHKYKETE IMWTRTKTRE HGFDETVKEY KQKNMESDKE TNGVICETER  180
FGVMNSPYEN RIIDWISKSD ANIFEDHSSS STDNNININV GSWWFQEILD FEEFSCSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2891132105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2891132105C-Myb DNA-Binding Domain
1msf_C2e-2891132105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125253.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172561e-146AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195991e-146AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052571e-146BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125253.11e-178PREDICTED: transcription factor MYB24-like
SwissprotQ9SCP11e-127MYB27_ARATH; Transcription factor MYB27
TrEMBLM4EID51e-176M4EID5_BRARP; Uncharacterized protein
STRINGBra028550.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-123myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]